Parses a TrackMate XML file and returns spot data from filtered tracks
as an aniframe. TrackMate stores spot coordinates in image (top-left)
coordinates; the reader reflects y so the returned aniframe is in the
conventional bottom_left origin. The frame height is read from
Settings/ImageData/@height in the XML by default.
Usage
read_trackmate(path, slim = TRUE, video_height = NULL)
Arguments
- path
Path to the TrackMate XML file.
- slim
If TRUE, return only essential columns (default TRUE).
- video_height
Optional numeric height of the source frame in the
units reported by the XML. Overrides the value parsed from
Settings/ImageData/@height when both are available.
Value
An aniframe with columns including time, x, y, z, frame, and track_id.